Senior Scientist, Computational Biology
Cambridge, MA USA
Applications have closed
Flagship Pioneering, Inc.
We are Flagship Pioneering We are a biotechnology company that invents platforms and builds companies that change the world. CEO Chats from the Flagship…What if… you could join an organization that creates, resources, and builds life sciences companies that invent breakthrough technologies in order to transform health care and sustainability?
Metaphore Biotechnologies is an early-stage biotechnology company with an ambitious and exciting mission: to reimagine drug discovery and vaccine design. The company is developing a first-in-class platform for the intelligent design of molecular mimicry. Our platform integrates massively parallel assays with machine-learning-guided protein engineering to navigate the combinatorial space of molecular interactions and design protein-protein interfaces with exquisite precision.
Metaphore Biotechnologies is a product of Flagship Pioneering's venture creation engine, which has also given rise to companies such as Moderna Therapeutics (NASDAQ: MRNA), Editas Medicine (NASDAQ: EDIT), Omega Therapeutics (NASDAQ: OMGA), Seres Therapeutics (NASDAQ: MCRB), and Indigo Agriculture. Since its launch in 2000, Flagship has applied its unique hypothesis-driven innovation process to originate and foster more than 100 scientific ventures. In 2021, Flagship Pioneering was ranked 12th globally on Fortune’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies.
Position Summary:
Metaphore Biotechnologies is seeking an enthusiastic Senior Scientist to join our Computational Biology team and accelerate the design of protein-protein interfaces. In this role, you will collaborate closely with members of the Computational Biology and Protein Engineering teams to advance our use of next-generation sequencing-based mutational assays to characterize and engineer molecular interactions. Your scientific-rigor and creativity will advance our platform, unlocking the potential of molecular mimicry for therapeutic development. The ideal candidate will bring experience in mutational screening, bioinformatic pipelines design and analysis, and experience implementing robust data standards. This individual will have the opportunity to join a dynamic interdisciplinary team working at the interface of computational biology, protein engineering, functional genomics and machine learning.
The candidate will also have an extraordinary opportunity to be part of the Flagship ecosystem of companies, providing unique networking benefits through regular meetups, collaboration, and an environment of development and discussion around new ideas shaping the fields of computational biology and ML/AI.
Key Responsibilities:
- Provide scientific and technical expertise in the analysis and interpretation of NGS-based mutational screens.
- Contribute to the continuous development of scientifically rigorous next-generation sequencing (NGS) pipelines.
- Develop and implement computational frameworks to derive biological insights from data, such as mapping key residues for molecular interactions and estimating interaction kinetics.
- Collaborate on experimental design to establish and maintain high data quality standards and confidence in results.
- Leverage internal and external datasets to aid in interpretation and further develop our ML-guided protein engineering platform.
- Collaborate with computational and experimental scientists and engineers to execute on company goals.
- Communicate insights and conclusions to scientific colleagues and the leadership team.
Qualifications:
- PhD or equivalent, plus 3+ years of experience in computational biology, bioinformatics, or a related field.
- Experience developing robust quantitative NGS-based pipelines in a cloud platform. Familiarity with AWS, docker and snakemake is a plus.
- Experience with screening or highly parallel protein engineering workflows is highly desired.
- Prior experience in automated noise thresholding is a plus.
- Very strong programming skills in python and knowledge of software development best practices.
- Excellent communication skills and capable of clearly conveying technical information.
- Experience collaborating with wet lab scientists to jointly execute on goals.
- Strong organization and problem-solving skills.
- Experience with machine learning of biomolecules is a plus.
Flagship Pioneering and our ecosystem companies are committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.
Recruitment & Staffing Agencies: Flagship Pioneering and its affiliated Flagship Lab companies (collectively, “FSP”) do not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to FSP or its employees is strictly prohibited unless contacted directly by Flagship Pioneering’s internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of FSP, and FSP will not owe any referral or other fees with respect thereto.
* Salary range is an estimate based on our AI, ML, Data Science Salary Index 💰
Tags: AWS Bioinformatics Biology Data quality Docker Drug discovery Engineering Machine Learning PhD Pipelines Protein engineering Python
Perks/benefits: Career development Health care Startup environment
More jobs like this
Explore more AI, ML, Data Science career opportunities
Find even more open roles in Artificial Intelligence (AI), Machine Learning (ML), Natural Language Processing (NLP), Computer Vision (CV), Data Engineering, Data Analytics, Big Data, and Data Science in general - ordered by popularity of job title or skills, toolset and products used - below.
- Open AI Engineer jobs
- Open Data Science Manager jobs
- Open Senior Business Intelligence Analyst jobs
- Open MLOps Engineer jobs
- Open Data Manager jobs
- Open Data Engineer II jobs
- Open Sr Data Engineer jobs
- Open Power BI Developer jobs
- Open Principal Data Engineer jobs
- Open Data Analytics Engineer jobs
- Open Business Intelligence Developer jobs
- Open Data Scientist II jobs
- Open Junior Data Scientist jobs
- Open Product Data Analyst jobs
- Open Senior Data Architect jobs
- Open Business Data Analyst jobs
- Open Sr. Data Scientist jobs
- Open Big Data Engineer jobs
- Open Data Analyst Intern jobs
- Open Manager, Data Engineering jobs
- Open Azure Data Engineer jobs
- Open Junior Data Engineer jobs
- Open Data Product Manager jobs
- Open ETL Developer jobs
- Open Data Quality Analyst jobs
- Open Data quality-related jobs
- Open Business Intelligence-related jobs
- Open ML models-related jobs
- Open Data management-related jobs
- Open GCP-related jobs
- Open Java-related jobs
- Open Privacy-related jobs
- Open Finance-related jobs
- Open Data visualization-related jobs
- Open APIs-related jobs
- Open Deep Learning-related jobs
- Open PyTorch-related jobs
- Open Snowflake-related jobs
- Open Consulting-related jobs
- Open TensorFlow-related jobs
- Open PhD-related jobs
- Open CI/CD-related jobs
- Open Kubernetes-related jobs
- Open NLP-related jobs
- Open Data governance-related jobs
- Open LLMs-related jobs
- Open Airflow-related jobs
- Open Data warehouse-related jobs
- Open Databricks-related jobs
- Open Hadoop-related jobs